This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2012.6.30)  27 JAN 2013 14:06
entering extended mode
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**bedtools.tex
(./bedtools.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h
ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma
rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, 
kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk,
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lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, 
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Chapter 1.
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Chapter 2.
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Chapter 5.
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