Path to Raw Images:
re-scan (images 20x): 
S:\YokogawaCV8000Standalone\BTSData\MeasurementData\claudia\CS_20221221_AxPD11_20to120d_TH-488_MAP2-647_TUJ1-568_20to120d_20221220_145833\12-21-22_18-01-42

Pre-scan (select organoid 4x):
S:\YokogawaCV8000Standalone\BTSData\MeasurementData\claudia\CS_20221221_MOs_PreScan_647_A2-4_20to120d_20221220_145833\12-21-22_17-52-49

Acessory path (Naming Organoids):
S:\HCS_Platform\Data\ClaudiaSaraiva\AccessoryFilesForIris\CS_20221221_MOs_PreScan_647_A2-4_20to120d_20221220_145833_12-21-22_17-52-49


Only day 30 ("30d" in AreaName column) and the following columns were used in the current work:
"AF" named "THoverlapMap2ByMap2" ;
"AR" named "SkelTHNorm";
"AW" named "THFragmentation".

Name structure: Cellline_internal-database-number_Condition_Treatment(if-any)_Day_Batch_Replicate 
Example:
18075_375_WT_NA_D30_B11_R2 = Ctrl1 --> Day 30, Batch11, Replicate 2 
580_278_WT_NA_D30_B11_R1 = Ctrl2 --> Day 30, Batch11, Replicate 1 
581_280_WT_NA_D30_B11_R1 = Ctrl3 --> Day 30, Batch11, Replicate 1
Miro1RQ_376_PD-Miro1R272Q_NA_D30_B11_R1 = PD --> Day 30, Batch11, Replicate 1
GC-Miro1RQ_377_GC-Miro1R272Q_NA_D30_B11_R1 = iCtrl --> Day 30, Batch11, Replicate 1