Path to Raw Images:
re-scan (images 20x): 
S:\YokogawaCV8000Standalone\BTSData\MeasurementData\claudia\CS_20210917_AxPD9_TH-488_MAP2-647_TUJ1-568_axpd9_20210917_182459\09-17-21_18-45-52

Pre-scan (select organoid 4x):
S:\YokogawaCV8000Standalone\BTSData\MeasurementData\claudia\CS_20210917_MOs_PreScan_647_axpd9_20210917_182459\09-17-21_18-35-26

Acessory path (Naming Organoids):
CS_20210917_AxPD9_TH-488_MAP2-647_TUJ1-568_axpd9_20210917_182459


Only the following colunms were used in the current work:
"AF" named "THoverlapMap2ByMap2" ;
"AR" named "SkelTHNorm";
"AW" named "THFragmentation".

Name structure: Day_Condition/celline_Replicate
Example:

30d_WT_18075_1 = Ctrl1 --> day 30, batch 9, Replicate 1
30d_WT_580_1 = Ctrl2 --> day 30, batch 9, Replicate 1
30d_WT_581_1 = Ctrl3 --> day 30, batch 9, Replicate 1
30d_Rhot1_RQ_1 = PD --> day 30, batch 9, Replicate 1
30d_Rhot1_RQ_GC_2  = iCtrl --> day 30, batch 9, Replicate 2