Preview path (complete output):
Preview data path:\\atlas\LCSB_HCS\HCS_Platform\Data\AliseZagare\FOXA2_TH_MAP2  
TH and MAP2 previews (no FOXA2 considered) and only Ctrl and LI conditions (Ctrl=IR, LI=IS)

Data excluded:

B1D60:
OR4	A02	WT_23338_Ctrl_R2

B2D60: 
OR17	A04	WT_68_Ctrl_R1_D60
OR18	A04	WT_68_LI_R1_D60 (empthy)
OR4	A03	WT_23338_LI_R3_D60 (empty)
OR2	A04	WT_23338_LI_R3_D60
OR14	A03	WT_56_LI_R1_D60
OR11	A03	WT_23338_LI_R2_D60


B3D60: repeat
OR21	A04	WT_23338_LI_B5_R1_D60

B1D30: none excluded 
B2D30: none excluded
B3D30: none excluded


TH_MAP2.csv-final csv file
image_analysis-THMAP2 -final script

*D30 and D60 all three batches acquired with the same settings in yokogawa and analyzed with the same settings in matlab 
to enable compariosn between time points
Matlab script path in cluster: /projects/lcsb_hcs/Advanced/AliseZagare/PD_Diabetes1