{"id":"waterfall","name":"Waterfall","dataTypes":{"subset1":["CLINICAL.TXT"]},"dataFileInputMapping":{"MRNA.TXT":"mrnaData","CLINICAL.TXT":"TRUE","SNP.TXT":"snpData"},"pivotData":false,"variableMapping":{"||CONCEPT||":"dataNode","||GENES||":"divDataNodePathway","||CONCEPTTYPE||":"divDataNodeType","||AGGREGATE||":"divDataNodeprobesAggregation","||TIMEPOINTS||":"divDataNodetimepoints","||LOWRANGEVALUE||":"lowRangeValue","||SNPTYPE||":"divDataNodeSNPType","||LOWRANGEOPERATOR||":"lowRangeOperator","||TISSUES||":"divDataNodetissues","||HIGHRANGEVALUE||":"highRangeValue","||HIGHRANGEOPERATOR||":"highRangeOperator","||SAMPLE||":"divDataNodesamples"},"converter":{"R":["source('||PLUGINSCRIPTDIRECTORY||Common/dataBuilders.R')","source('||PLUGINSCRIPTDIRECTORY||Common/ExtractConcepts.R')","source('||PLUGINSCRIPTDIRECTORY||Common/collapsingData.R')","source('||PLUGINSCRIPTDIRECTORY||Waterfall/BuildWaterfallData.R')","WaterfallData.build(\n        input.dataFile    = '||TEMPFOLDERDIRECTORY||Clinical/clinical.i2b2trans',\n        concept           = '||CONCEPT||',\n        input.gexFile     = '||TEMPFOLDERDIRECTORY||mRNA/Processed_Data/mRNA.trans',\n        input.snpFile     = '||TEMPFOLDERDIRECTORY||SNP/snp.trans',\n        concept.type      = '||CONCEPTTYPE||',\n        genes             = '||GENES||',\n        genes.aggregate   = '||AGGREGATE||',\n        sample            = '||SAMPLE||',\n        time              = '||TIMEPOINTS||',\n        snptype           = '||SNPTYPE||',\n        lowRangeOperator  = '||LOWRANGEOPERATOR||',\n        lowRangeValue     = '||LOWRANGEVALUE||',\n        highRangeOperator = '||HIGHRANGEOPERATOR||',\n        highRangeValue    = '||HIGHRANGEVALUE||')"]},"processor":{"R":["source('||PLUGINSCRIPTDIRECTORY||Waterfall/WaterfallPlotLoader.R')","WaterfallPlot.loader(\n        input.filename = 'outputfile',\n        concept        = '||CONCEPT||')"]},"renderer":{"GSP":"/waterfall/waterfallOut"},"view":"Waterfall"}