{"id":"acghFrequencyPlot","name":"Frequency Plot for aCGH","dataTypes":{"subset1":["CLINICAL.TXT"]},"dataFileInputMapping":{"CLINICAL.TXT":"TRUE","ACGH_REGIONS.TXT":"TRUE"},"pivotData":false,"variableMapping":{"||REGION||":"regionVariable","||GROUP||":"groupVariable","||STATISTICSTYPE||":"statisticsType","||ABERRATIONTYPE||":"aberrationType"},"converter":{"R":["source('||PLUGINSCRIPTDIRECTORY||aCGH/aCGHBuildFrequencyPlotData.R')","aCGHFrequencyPlotData.build(\n\tinput.dataFile      = '||TEMPFOLDERDIRECTORY||Clinical/clinical.i2b2trans',\n\tinput.acghFile      = '||TEMPFOLDERDIRECTORY||aCGH/regions.txt',\n\tconcept.region      = '||REGION||',\n\tconcept.group       = '||GROUP||',\n\toutput.column.group = 'group',\n\toutput.dataFile     = 'phenodata.tsv',\n\toutput.acghFile     = 'regions.tsv')"]},"processor":{"R":["source('||PLUGINSCRIPTDIRECTORY||aCGH/acgh-frequency-plot.R')","acgh.frequency.plot(\n\tcolumn                 = 'group')"]},"renderer":{"GSP":"/AcghFrequencyPlot/acghFrequencyPlotOutput"},"view":"AcghFrequencyPlot"}