{"id":"boxPlot","name":"Box Plot with ANOVA","dataTypes":{"subset1":["CLINICAL.TXT"]},"dataFileInputMapping":{"CLINICAL.TXT":"TRUE","MRNA_DETAILED.TXT":"mrnaData","SNP.TXT":"snpData"},"pivotData":false,"variableMapping":{"||FLIPIMAGE||":"flipImage","||AGGREGATEIND||":"divIndependentVariableprobesAggregation","||BINNING||":"binning","||GPLDEP||":"divDependentVariablegpls","||GPLINDEP||":"divIndependentVariablegpls","||BINNINGTYPE||":"binDistribution","||BINNINGRANGESTRING||":"binRanges","||TIMEPOINTSDEP||":"divDependentVariabletimepoints","||RBMPANELDEP||":"divDependentVariablerbmPanels","||TYPEDEP||":"divDependentVariableType","||TYPEIND||":"divIndependentVariableType","||SNPTYPEIND||":"divIndependentVariableSNPType","||GPLIND||":"divIndependentVariablegpls","||RBMPANELIND||":"divIndependentVariablerbmPanels","||SNPTYPEDEP||":"divDependentVariableSNPType","||TIMEPOINTIND||":"divIndependentVariabletimepoints","||DEPENDENT||":"dependentVariable","||NUMBERBINS||":"numberOfBins","||GENESDEPNAME||":"divDependentPathwayName","||PLATFORMDEP||":"divDependentVariableplatforms","||GENESIND||":"divIndependentVariablePathway","||BINNINGVARIABLE||":"binVariable","||SAMPLEIND||":"divIndependentVariablesamples","||TISSUEDEP||":"divDependentVariabletissues","||GENESDEP||":"divDependentVariablePathway","||PLATFORMIND||":"divIndependentVariableplatforms","||AGGREGATEDEP||":"divDependentVariableprobesAggregation","||BINNINGVARIABLETYPE||":"variableType","||SAMPLEDEP||":"divDependentVariablesamples","||TISSUEIND||":"divIndependentVariabletissues","||INDEPENDENT||":"independentVariable","||GENESINDNAME||":"divIndependentPathwayName","||BINNINGMANUAL||":"manualBinning"},"converter":{"R":["source('||PLUGINSCRIPTDIRECTORY||Common/dataBuilders.R')","source('||PLUGINSCRIPTDIRECTORY||Common/ExtractConcepts.R')","source('||PLUGINSCRIPTDIRECTORY||Common/collapsingData.R')","source('||PLUGINSCRIPTDIRECTORY||Common/BinData.R')","source('||PLUGINSCRIPTDIRECTORY||ANOVA/BuildANOVAData.R')","ANOVAData.build(\n        input.dataFile              = '||TEMPFOLDERDIRECTORY||Clinical/clinical.i2b2trans',\n        concept.dependent           = '||DEPENDENT||',\n        concept.independent         = '||INDEPENDENT||',\n        binning.enabled             = '||BINNING||',\n        binning.bins                = '||NUMBERBINS||',\n        binning.type                = '||BINNINGTYPE||',\n        binning.manual              = '||BINNINGMANUAL||',\n        binning.binrangestring      = '||BINNINGRANGESTRING||',\n        binning.variabletype        = '||BINNINGVARIABLETYPE||',\n        binning.variable            = '||BINNINGVARIABLE||',\n        flipimage                   = as.logical('||FLIPIMAGE||'),\n        input.gexFile               = '||TEMPFOLDERDIRECTORY||mRNA/Processed_Data/mRNA.trans',\n        input.snpFile               = '||TEMPFOLDERDIRECTORY||SNP/snp.trans',\n        concept.dependent.type      = '||TYPEDEP||',\n        concept.independent.type    = '||TYPEIND||',\n        genes.dependent             = '||GENESDEP||',\n        genes.independent           = '||GENESIND||',\n        genes.dependent.aggregate   = '||AGGREGATEDEP||',\n        genes.independent.aggregate = '||AGGREGATEIND||',\n        sample.dependent            = '||SAMPLEDEP||',\n        sample.independent          = '||SAMPLEIND||',\n        time.dependent              = '||TIMEPOINTSDEP||',\n        time.independent            = '||TIMEPOINTIND||',\n        snptype.dependent           = '||SNPTYPEDEP||',\n        snptype.independent         = '||SNPTYPEIND||',\n        gpl.dependent               = '||GPLDEP||',\n        gpl.independent             = '||GPLINDEP||')"]},"processor":{"R":["source('||PLUGINSCRIPTDIRECTORY||ANOVA/BoxPlotLoader.R')","BoxPlot.loader(\n        input.filename           = 'outputfile',\n        concept.dependent        = '||DEPENDENT||',\n        concept.independent      = '||INDEPENDENT||',\n        flipimage                = as.logical('||FLIPIMAGE||'),\n        concept.dependent.type   = '||TYPEDEP||',\n        concept.independent.type = '||TYPEIND||',\n        genes.dependent          = '||GENESDEPNAME||',\n        genes.independent        = '||GENESINDNAME||',\n        binning.enabled          = '||BINNING||',\n        binning.variable         = '||BINNINGVARIABLE||')"]},"renderer":{"GSP":"/boxPlot/boxPlotOut"},"view":"BoxPlot"}