{"id":"RNASeqgroupTest","name":"RNASeq Group Test","dataTypes":{"subset1":["CLINICAL.TXT"]},"dataFileInputMapping":{"CLINICAL.TXT":"TRUE","RNASEQ.TXT":"TRUE"},"pivotData":false,"variableMapping":{"||RNASEQ||":"RNASeqVariable","||GROUP||":"groupVariable","||ANALYSISTYPE||":"analysisType"},"converter":{"R":["source('||PLUGINSCRIPTDIRECTORY||RNASeq/RNASeq-Build-DEanalysisData.R')","RNASeqDEanalysisData.build(\n        input.clinicalFile  = '||TEMPFOLDERDIRECTORY||Clinical/clinical.i2b2trans',\n        input.rnaseqFile    = '||TEMPFOLDERDIRECTORY||RNASeq/RNASeq.txt',\n        concept.readcount   = '||RNASEQ||',\n        concept.group       = '||GROUP||',\n        output.column.group = 'group',\n        output.clinicalFile = 'phenodata.tsv',\n        output.rnaseqFile   = 'readcount.tsv')"]},"processor":{"R":["source('||PLUGINSCRIPTDIRECTORY||RNASeq/RNASeq-edgeR-DEanalysis.R')","DEanalysis.group.test(\n        analysisType      = '||ANALYSISTYPE||',\n        readcountFileName = 'readcount.tsv',\n        phenodataFileName = 'phenodata.tsv')"]},"renderer":{"GSP":"/RNASeqgroupTest/RNASeqgroupTestOutput"},"view":"RNASeqGroupTest"}