{"id":"aCGHgroupTest","name":"aCGH Group Test","dataTypes":{"subset1":["CLINICAL.TXT"]},"dataFileInputMapping":{"CLINICAL.TXT":"TRUE","ACGH_REGIONS.TXT":"TRUE"},"pivotData":false,"variableMapping":{"||REGION||":"regionVariable","||GROUP||":"groupVariable","||STATISTICSTYPE||":"statisticsType","||ABERRATIONTYPE||":"aberrationType"},"converter":{"R":["source('||PLUGINSCRIPTDIRECTORY||aCGH/aCGHBuildGroupTestData.R')","aCGHGroupTestData.build(\n\tinput.dataFile      = '||TEMPFOLDERDIRECTORY||Clinical/clinical.i2b2trans',\n\tinput.acghFile      = '||TEMPFOLDERDIRECTORY||aCGH/regions.txt',\n\tconcept.region      = '||REGION||',\n\tconcept.group       = '||GROUP||',\n\toutput.column.group = 'group',\n\toutput.dataFile     = 'phenodata.tsv',\n\toutput.acghFile     = 'regions.tsv')"]},"processor":{"R":["source('||PLUGINSCRIPTDIRECTORY||aCGH/acgh-group-test.R')","acgh.group.test(\n\tcolumn                 = 'group',\n\ttest.statistic         = '||STATISTICSTYPE||',\n\tnumber.of.permutations = 10000,\n\ttest.aberrations       = '||ABERRATIONTYPE||')"]},"renderer":{"GSP":"/aCGHgroupTest/aCGHgroupTestOutput"},"view":"aCGHGroupTest"}